Publications
Publications
2024
-
Gutiérrez-Preciado A, Dede, Baker BA, Eme L, Moreira D, Lopez-Garcia P
(2024)
Extremely acidic proteomes and metabolic flexibility in bacteria and highly diversified archaea thriving in geothermal chaotropic brines
Nature Ecol Evol, 8: 1856–1869
-
Prokina KI, Yubuki N, Tikhonenkov EV, Ciobanu MC, Lopez-Garcia P, Moreira D
(2024)
Refurbishing the marine parasitoid order Pirsoniales with newly (re)described marine and freshwater free-living predators
J Euk Microbiol, 00: e13061 (early view)
-
Moreira D, Blas J, Kim E, Eme L
(2024)
A gene-rich mitochondrion with a unique ancestral protein transport system
Curr Biol, 34: P3812-3819.e3
-
Baker BA, Gutierrez-Preciado A, Rodriguez del Rio A, McCarthy CGP, Lopez-Garcia P, Huerta-Cepas J, Susko E, Eme L, Moreira D
(2024)
Expanded phylogeny of extremely halophilic archaea shows multiple independent adaptations to hypersaline environments
Nature Microbiol, 9: 964–975
-
Cubillos CF, Aguilar P, Moreira D, Bertolino P, Iniesto M, Dorador C, Lopez-Garcia P
(2024)
Exploring the prokaryote-eukaryote interplay in microbial mats from an Andean athalassohaline wetland
Microbiology Spectrum, 12: e00072-24
-
Bacchetta T, López-García P, Gutiérrez-Preciado A, Mehta N, Skouri-Panet F, Benzerara K, Ciobanu, M, Yubuki N, Tavera R, Moreira D
(2024)
Description of Gloeomargarita ahousahtiae sp. nov. (Gloeomargaritales), a thermophilic cyanobacterium with intracellular carbonate inclusions
Eur J Phycol, 59: 11-20
-
Cho A, Tikhonenkov DV, Lax G, Prokina KI, Keeling PJ
(2024)
Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean
Mol Phyl Evol, 190: 107964
-
Prokina K, Tikhonenkov D, Lopez-Garcia P, Moreira D
(2024)
Morphological and molecular characterization of a new member of the phylum Rhodelphidia
J Euk Microbiol, 71: e12995
-
Ramos JL, de Lorenzo V, López-García P
(2024)
Meeting Report: Microbes as Safeguards of the Environment
Sustainable Microbiology, 1: qvae013
-
Timmis K, Hallsworth JE, McGenity TJ, Armstrong R, Colom MF, Karahan ZC, Chavarría M, Bernal P, Boyd ES, Ramos JL, Kaltenpoth M, Pruzzo C, Clarke G, López-Garcia P, Yakimov MM, Perlmutter J, Greening C, Eloe-Fadrosh E, Verstraete W, Nunes OC, Kotsyurbenko O, Nikel PI, Scavone P, Häggblom MM, Lavigne R, Le Roux F, Timmis JK, Parro V, Michán C, García JL, Casadevall A, Payne SM, Frey J, Koren O, Prosser JI, Lahti L, Lal R, Anand S, Sood U, Offre P, Bryce CC, Mswaka AY, Jores J, Kaçar B, Blank LM, Maaßen N, Pope PB, Banciu HL, Armitage J, Lee SY, Wang F, Makhalanyane TP, Gilbert JA, Wood TK, Vasiljevic B, Soberón M, Udaondo Z, Rojo F, Tamang JP, Giraud T, Ropars J, Ezeji T, Müller V, Danbara H, Averhoff B, Sessitsch A, Partida-Martínez LP, Huang W, Molin S, Junier P, Amils R, Wu XL, Ron E, Erten H, de Martinis ECP, Rapoport A, Öpik M, Pokatong WDR, Stairs C, Amoozegar MA, Serna JG.
(2024)
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society
Microb Biotechnol 17: e14456.
-
Williams TA, Davin AA, Szánthó LL, Stamatakis A, Wahl NA, Woodcroft BJ, Soo RM, Eme L, Sheridan PO, Gubry-Rangin C, Spang A, Hugenholtz P, Szöllősi GJ
(2024)
Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution
ISME J. 18:wrae129
-
Reñé A, Timoneda N, Khodami S, López-García P, Martinez P, Hoppenrath M
(2024)
Morpho-molecular characterization of sand-dwelling dinoflagellate communities from the German Wadden Sea and insights on their spatiotemporal distribution
Eur J Phycol, 59: 196-217
-
Banos H, Wong TKF, Daneau J, Susko E, Minh BQ, Lanfear R, Brown MW, Eme L, Roger AJ
(2024)
GTRpmix: A linked general-time reversible model for profile mixture models
Mol Biol Evol, 19:msae174
-
Jones RE, Tice AK, Eliáš M, Eme L, Kolísko M, Nenarokov S, Pánek T, Rokas A, Salomaki E, Strassert JFH, Shen XX, Žihala D, Brown MW
(2024)
Create, analyze, and visualize phylogenomic datasets using PhyloFisher
Curr Protoc. 4:e969
-
Eme L, Tamarit D
(2024)
Microbial diversity and open questions about the Deep Tree of Life
Genome Biol Evol. 16:evae053
-
Boukheloua R, Mukherjee I, Park H, Šimek K, Kasalický V, Ngochera M, Grossart HP, Picazo-Mozo A, Camacho A, Cabello-Yeves PJ, Rodriguez-Valera F, Callieri C, Andrei AS, Pernthaler J, Posch T, Alfreider A, Sommaruga R, Hahn MW, Sonntag B, Lopez-Garcia P, Moreira D, Jardillier L, Lepère C, Biderre-Petit C, Bednarska A, Ślusarczyk M, Tóth VR, Banciu HL, Kormas K, Orlic S, Šantić D, Muyzer G, Herlemann DPR, Tammert H, Bertilsson S, Langenheder S, Zechmeister T, Salmaso N, Storelli N, Capelli C, Lepori F, Lanta V, Vieira HH, Kostanjšek F, Kabeláčová K, Chiriac MC, Haber M, Shabarova T, Fernandes C, Rychtecký P, Znachor P, Szőke-Nagy T, Layoun P, Wong HL, Kavagutti VS, Bulzu PA, Salcher MM, Piwosz K, Ghai R
(2024)
Global freshwater distribution of Telonemia protists
ISME J. 20:wrae177. doi: 10.1093/ismejo/wrae177.
-
A. Foubert, D. Keir, B. Atnafu, T. Kidane and the ADD-ON Workshop Consortium
(2024)
Workshop report ADD-ON: Afar Dallol Drilling - ONset of sedimentary processes in an active rift basin
Sci. Drilling. 33: 207–218.
2023
-
López-García P, Gutiérrez-Preciado A, Krupovic M, Ciobanu M, Deschamps P, Jardillier L, López-Pérez M, Rodríguez-Valera F, Moreira D
(2023)
Metagenome-derived virus-microbe ratios across ecosystems
ISME J. 17: 1552-1563
-
López-García P, Moreira D
(2023)
The symbiotic origin of the eukaryotic cell
C R Biol, 346: 55-73
-
Malaterre C, Javaux EJ, López-García P
(2023)
Misconceptions in Science
Perspectives on Science, 31: 717-743.
-
Eme L, Tamarit D, Caceres EF, Stairs CW, De Anda V, Schön ME, Seitz KW, Dombrowski N, Lewis WH, Homa F, Saw JH, Lombard J, Nunoura T, Wen-Jun L, Hua ZS, Chen LX, Banfield JF, St John E, Reysenbach AL, Stott MB, Schramm A, Kjeldsen KU, Teske AP, Baker BJ, Ettema TJG
(2023)
Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes
Nature, 618: 992-999
-
Yubuki N, Torruella G, Glindo LJ, Heiss AA, Ciobanu MC, Shiratoir T, Ishida K, Blas J, Kim E, Moreira D, Lopez-Garcia P, Eme L
(2023)
Molecular and morphological characterization of four new ancyromonad genera and proposal for an updated taxonomy of the Ancyromonadida
J Euk Microbiol 70: e12997
-
Galindo LJ, Torruella G, López-García P, Ciobanu M, Gutiérrez-Preciado A, Karpov SA, Moreira D
(2023)
Phylogenomics supports the monophyly of aphelids and fungi and identifies new molecular synapomorphies
Syst Biol, 3: 505–515.
-
Muller E, Rapin W, Caumartin J, Jézéquel D, De Wever A, Thomazo C, Havas R, López-García P, Moreira D, Tavera R, Benzerara K
(2023)
Diagenetic formation of stevensite by replacement of diatom frustules in the sediments of the alkaline Lake Alchichica (Mexico)
Sedimentology, 70: 1013-1038
-
Galindo LJ, Prokina K, Torruella G, López-García P, Moreira D
(2023)
Maturases and group II introns in the mitochondrial genomes of the deepest jakobid branch
Genome Biol Evol, 15: evad058.
-
Caumartin J, Benzerara K, Havas R, Thomazo C, López-García P, Duprat E
(2023)
The chemical conditions necessary for the formation of microbialites
Geochem Persp Let, 25: 30–35
-
Babajanyan SG, Wolf YI, Khachatryan A, Allahverdyan A, López-García P, Koonin EV
(2023)
Coevolution of reproducers and replicators at the origin of life and the conditions for the origin of genomes
Proc Natl Acad Sci U S A, 120: e2301522120
-
Torruella G, Galindo LA, Moreira D, Ciobanu M, Heiss AA, Yubuki N, Kim E, López-García P
(2023)
Expanding the molecular and morphological diversity of Apusomonadida, a deep-branching group of gliding bacterivorous protists
J Euk Microbiol, 70: e12956
-
Christaki U, Skouroliakou D-I, Jardillier L
(2023)
Interannual dynamics of putative parasites (Group II Syndiniales) in a coastal ecosystem
Environ Microbiol, 25: 1314-1328
-
Gaëtan J, Halary S, Millet M, Bernard C, Duval C, Hamlaoui S, Hecquet A, Gugger M, Marie B, Mehta N, Moreira D, Skouri-Panet F, Travert C, Duprat E, Leloup J, Benzerara K.
(2023)
Widespread formation of intracellular calcium carbonates by the bloom-forming cyanobacterium Microcystis.
Environ Microbiol. 25: 751-765.
-
Havas R, Thomazo C, Iniesto M, Jézéquel D, Moreira D, Tavera R, Caumartin J, Muller E, López-García P, Benzerara K
(2023)
Biogeochemical processes captured by carbon isotopes in redox-stratified water columns: a comparative study of four modern stratified lakes along an alkalinity gradient
Biogeosci. 20: 2347-2367.
-
Havas R, Thomazo C, Iniesto M, Jézéquel D, Moreira D, Tavera R, Caumartin J, Muller E, López-García P, Benzerara K
(2023)
The hidden role of dissolved organic carbon in the biogeochemical cycle of carbon in modern redox-stratified lakes
Biogeosci. 20: 2405–2424.
-
Blaz J, Galindo LJ, Heiss AA, Kaur H, Torruella G, Yang A, Alexa Thompson L, Filbert A, Warring S, Narechania A, Shiratori T, Ishida KI, Dacks JB, López-García P, Moreira D, Kim E, Eme L
(2023)
One high quality genome and two transcriptome datasets for new species of Mantamonas, a deep-branching eukaryote clade.
Sci Data, 10: 603
-
Benzerara K, Agnes E, Ciobanu , De Wever A, Bertolino P, Iniesto M, Jezequel D, López-García P, Menguy N, Muller E, Skouri-Panet F, Swaraj S, Tavera R, Thomazo C, Moreira D
(2023)
Biomineralization of amorphous Fe-, Mn- and Si-rich mineral phases by cyanobacteria under oxic and alkaline conditions
Biogeosci. 20: 4183–4195.
-
Novák LVF, Treitli SC, Pyrih J, Hałakuc P, Pipaliya SV, Vacek V, Brzoň O, Soukal P, Eme L, Dacks JB, Karnkowska A, Eliáš M, Hampl V
(2023)
Genomics of Preaxostyla flagellates illuminates the path towards the loss of mitochondria.
PLoS Genet. 19: e1011050
-
Courseaux A, George O, Deschamps P, Bompard C, Duchêne T, Dauvillée D
(2023)
BE3 is the major branching enzyme isoform required for amylopectin synthesis in Chlamydomonas reinhardtii
Front Plant Sci. 14:1201386
2022
-
Iniesto M, Moreira D, Benzerara K, Reboul G, Bertolino P, Tavera R, Lopez-Garcia P
(2022)
Planktonic microbial communities from microbialite-bearing lakes sampled along a salinity-alkalinity gradient
Limnol Oceanogr, 67: 2718-2733
-
Galindo LJ, López-García P, Moreira D
(2022)
First molecular characterization of the elusive marine protist Meteora sporadica
Protist, 173: 125896
-
Grau-Bové X, Navarrete C, Chiva C, Pribasnig T, Antó M, Torruella G, Galindo LJ, Lang BF, Moreira D,
López-Garcia P, Ruiz-Trillo I, Schleper C, Sabidó E, Sebé-Pedrós A
(2022)
A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution
Nature Ecol Evol, 6: 1007–1023
-
Muñoz-Gómez SA, Susko E, Williamson K, Eme L, Slamovits CH, Moreira D, López-García P, Roger AJ
(2022)
Site-and-branch-heterogeneous analyses of an expanded dataset favour mitochondria as sister to known Alphaproteobacteria
Nature Ecol Evol, 6: 253–262
-
Benzerara K, Duprat E, Bitard-Feildel T, Caumes G, Cassier-Chauvat C, Chauvat F, Dezi M, Diop SI, Gaschignard G, Gorgen S, Gugger M, Lopez-Garcıa P, Millet M, Skouri-Panet F, Moreira D, Callebaut I
(2022)
A new gene family diagnostic for intracellular biomineralization of amorphous Ca carbonates by
Cyanobacteria
Genome Biol Evol, 14: evac026
-
Belilla J, Iniesto M, Moreira D, Benzerara K, Gérard E, López-García JM, Kotopoulou E, López-García P
(2022)
Active microbial airborne dispersal and biomorphs as confounding factors for life detection in the cell-degrading brines of the polyextreme Dallol geothermal field.
mBio 13: e00307-22
-
van Beveren F, Eme L, López-García P, Ciobanu M, Moreira D
(2022)
Independent size expansions and intron proliferation in red algal plastid and mitochondrial genomes
Genome Biol Evol. 14:evac037
-
Zhang X, Hu Y, Eme L, Maruyama S, Eveleigh RJM, Curtis BA, Sibbald SJ, Hopkins JF, Filloramo GV, van Wijk KJ, Archibald JM
(2022)
TreeTuner: A pipeline for minimizing redundancy and complexity in large phylogenetic datasets
STAR Protoc. 3:101175
-
Tamarit D, Caceres EF, Krupovic M, Nijland R, Eme L, Robinson NP, Ettema TJG
(2022)
A closed Candidatus Odinarchaeum chromosome exposes Asgard archaeal viruses
Nature Micro, 7: 948–952
-
Tikhonenkov DV, Jamy M, Borodina AS, Belyaev AO, Zagumyonnyi DG, Prokina KI, Mylnikov AP, Burki F, Karpov SA.
(2022)
On the origin of TSAR: morphology, diversity and phylogeny of Telonemia.
Open Biol. 12: 210325
-
Schavemaker PE, Muñoz-Gómez SA.
(2022)
The role of mitochondrial energetics in the origin and diversification of eukaryotes.
Nature Ecol Evol. 6: 1307-1317
-
Tikhonenkov DV, Mikhailov KV, Gawryluk RMR, Belyaev AO, Mathur V, Karpov SA, Zagumyonnyi DG, Borodina AS, Prokina KI, Mylnikov AP, Aleoshin VV, Keeling PJ
(2022)
Microbial predators form a new supergroup of eukaryotes
Nature. 612: 714-719
-
Eme L, Stairs CW
(2022)
Life through the lens of metabolism
Nature Ecol Evol. 6: 1590
2021
-
Muñoz-Gómez SA, Kreutzand M, Hess S
(2021)
A microbial eukaryote with a unique combination of purple bacteria and green algae as endosymbionts
Science Advances, 7: eabg4102
-
Galindo LJ, López-García P, Torruella G, Karpov S, Moreira D
(2021)
Phylogenomics of a new fungal phylum reveals multiple waves of reductive evolution across Holomycota
Nature Communications, 12: 4973.
-
Belilla J, Iniesto M, Moreira D, Benzerara K, López-García JM, López-Archilla AI, Reboul G, Deschamps P, Gérard E, López-García P
(2021)
Archaeal overdominance close to life-limiting conditions in geothermally influenced hypersaline lakes at the Danakil Depression, Ethiopia
Environ Microbiol, 23: 7168-7182
-
Moreira D, Zivanovic Y, López-Archilla AI, Iniesto M, López-García P.
(2021)
Reductive evolution and unique predatory mode in the CPR bacterium Vampirococcus lugosii
Nature Communications, 12: 2454
-
Iniesto M, Moreira D, Benzerara K, Muller E, Bertolino P, Tavera R, López-García P
(2021)
Rapid formation of mature microbialites in Lake Alchichica, Mexico
Environ Microbiol Rep, 13:600-605
-
Reboul G, Moreira D, Annenkova N, Bertolino P, Vershinin KE, López-García P
(2021)
Marine signature taxa and core microbial community stability along latitudinal and vertical gradients in sediments of the deepest freshwater lake
ISME J, 15:3412–3417
-
David GM, Moreira D, Reboul G, Annenkova NV, Galindo LJ, Bertolino P, López-Archilla AI, Jardillier L, López-García P.
(2021)
Environmental drivers of plankton protist communities along latitudinal and vertical gradients in the oldest and deepest freshwater lake.
Environ Microbiol, 23: 1436-1451
-
Koreny L , Zeeshan M , Barylyuk K, Tromer EC , van Hooff JJE , Brady D , Ke H, Chelaghma S, Ferguson DJP, Eme L, Tewari R, Waller RF
(2021)
Molecular characterization of the conoid complex in Toxoplasma reveals its conservation in all apicomplexans, including Plasmodium species
PLoS Biol, 19:e3001081
-
Iniesto M, Gutierrez-Silva P, Dias JJ, Carvalho S, Buscalioni AD, Lopez-Archilla AI
(2021)
Soft tissue histology of insect larvae decayed in laboratory experiments using microbial mats: Taphonomic comparison with Cretaceous fossil insects from the exceptionally preserved biota of Araripe, Brazil.
Palaeogeography, Palaeoclimatology, Palaeoecology. 564: 110156
-
López-García P, Moreira D
(2021)
Physical connections: prokaryotes parasitizing their kin
Environ Microbiol Rep 13, 54–61
-
Iniesto M, Moreira D, Reboul G, Deschamps P, Benzerara K, Bertolino P, Saghaï A, Tavera R, López-García P
(2021)
Core microbial communities of lacustrine microbialites sampled along an alkalinity gradient
Environ Microbiol, 23: 51-68
-
Christaki U, Guenegues A, Liu Y, Blain S, Catala P, Debeljak P, Jardillier L, Irion S, Planchon F, Sassenhagen I, Sime-Ngando T, Obernosterer I
(2021)
Seasonal microbial food web dynamics in contrasting Southern Ocean productivity regimes
Limnol Oceanogr 66: 108-122
-
Irion S, Christaki U, Berthelot H, L’Helguen S, Jardillier L
(2021)
Small phytoplankton contribute greatly to CO2-fixation after the diatom bloom in the Southern Ocean
ISME J 15: 2509–2522
-
David G, López-García P, Moreira D, Alric B, Deschamps P, Bertolino P, Restoux G, Rochelle-Newall E, Thébault E, Simon M, Jardillier L
(2021)
Similar temporal patterns despite dissimilar prokaryotic and protist communities in small freshwater systems
Mol Ecol, 30:2162–2177
-
Reñé A, Hoppenrath M, Reboul G, Moreira D, López-García P
(2021)
Composition and temporal dynamics of sand-dwelling dinoflagellate communities from three Mediterranean beaches
Aquat Microb Ecol, 86: 85–98
-
Christaki U, Skouroliakou I-D, Delegrange A, Irion S, Courcot L, Jardillier L, Sassenhagen I
(2021)
Microzooplankton diversity and potential role in carbon cycling of contrasting Southern Ocean productivity regimes
Journal of Marine Systems, 219: 103531
-
Zeyen N, Benzerara K, Beyssac O, Daval D, Muller E, Thomazo C, Tavera R, Lopez-Garcia P, Moreira D, Duprat E
(2021)
Integrative analysis of the mineralogical and chemical composition of modern microbialites from ten Mexican lakes: What do we learn about their formation?
Geochim Cosmochim Acta, 305:148–184
-
Lax G, Kolisko M, Eglit Y, Lee WJ, Yubuki N, Karnkowska A, Leander BS, Burger G, Keeling PJ, Simpson AGB
(2021)
Multigene phylogenetics of euglenids based on single-cell transcriptomics of diverse phagotrophs
Mol Phylogenet Evol, 159:107088
-
Žárský V, Klimeš V, Pačes J, Vlček Č, Hradilová M, Beneš V, Nývltová E, Hrdý I, Pyrih J, Mach J, Barlow L, Stairs CW, Eme L, Hall N, Eliáš M, Dacks JB, Roger A, Tachezy J
(2021)
The Mastigamoeba balamuthi genome and the nature of the free-living ancestor of Entamoeba
Mol Biol Evol. 38:2240-2259
-
Tice AK, Žihala D, Pánek T, Jones RE, Salomaki ED, Nenarokov S, Burki F, Eliáš M, Eme L, Roger AJ, Rokas A, Shen XX, Strassert JFH, Kolísko M, Brown MW
(2021)
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships
PLoS Biol. 19:e3001365
-
Stairs CW, Táborský P, Salomaki ED, Kolisko M, Pánek T, Eme L, Hradilová M, Vlček Č, Jerlström-Hultqvist J, Roger AJ, Čepička I
(2021)
Anaeramoebae are a divergent lineage of eukaryotes that shed light on the transition from anaerobic mitochondria to hydrogenosomes
Curr Biol. S0960-9822(21)01364-6
-
Olvera-Vazquez SG, Remoué C, Venon A, Rousselet A, Grandcolas O, Azrine M, Momont L, Galan M, Benoit L, David GM, Alhmedi A, Beliën T, Alins G, Franck P, Haddioui A, Jacobsen SK, Andreev R, Simon S, Sigsgaard L, Guibert E, Tournant L, Gazel F, Mody K, Khachtib Y, Roman A, Ursu TM, Zakharov IA, Belcram H, Harry M, Roth M, Simon JC, Oram S, Ricard JM, Agnello A, Beers EH Engelman J, Balti I, Salhi-Hannachi A, Zhang H, Tu H, Mottet C, Barrès B, Degrave A, Razmjou J, Giraud T, Falque M, Dapena E, Miñarro M, Jardillier L, Deschamps P, Jousselin E, Cornille A
(2021)
Large-scale geography survey provides insights into the colonization history of a major aphid pest on its cultivated apple host in Europe, North America and North Africa
Peer Community Journal, 1, article no. e34
2020
-
Saghaï A, Zivanovic Y, Moreira D, Tavera R, López-García P
(2020)
A novel microbialite-associated phototrophic Chloroflexi lineage exhibiting a quasi-clonal pattern along depth
Genome Biol Evol. 12:1207-1216
-
López-García P, Moreira D
(2020)
The Syntrophy hypothesis for the origin of eukaryotes revisited
Nature Microbiol, 5: 655–667
-
López-García P, Moreira D
(2020)
Cultured Asgard archaea shed light on eukaryogenesis
Cell, 181: 232-235
-
Lopez-Garcia JM, Moreira D, Benzerara K, Grunewald O, López-García P
(2020)
Origin and evolution of the halo-volcanic complex of Dallol: Proto-volcanism in Northern Afar (Ethiopia)
Front Earth Sci 7: 351
-
Yubuki N, López-García P, Reboul G, Brown MW, Pollet N, Moreira D
(2020)
Ancient adaptive lateral gene transfers in the symbiotic Opalina - Blastocystis stramenopile lineage
Mol Biol Evol, 37:651-659
-
Sassenhagen I, Irion S, Jardillier L, Moreira D, Christaki U
(2020)
Protist interactions and community structure during early autumn in the Kerguelen region (Southern Ocean)
Protist, 171:125709
-
Reñé A, Auladell A, Reboul G, Moreira D, López-García P
(2020)
Performance of the melting seawater‐ice elution method on the metabarcoding characterization of benthic protist communities
Environ Microbiol Rep, 12:314-323
-
Massoni J, Bortfeld-Miller M, Jardillier L, Salazar G, Sunagawa S, Vorholt JA
(2020)
Consistent host and organ occupancy of phyllosphere bacteria in a community of
wild herbaceous plant species
ISME J. 14:245-258
-
Dharamshi JE, Tamarit D, Eme L, Stairs CW, Martijn J, Homa F, Jørgensen SL,
Spang A, Ettema TJG
(2020)
Marine sediments illuminate Chlamydiae diversity and evolution
Curr Biol. 30:1032-1048
-
Reñé A, Satta CT, López-García P, Hoppenrath M
(2020)
Re-evaluation of Amphidiniopsis (Dinophyceae) morphogroups based on phylogenetic relationships and description of three new sand-dwelling species from the NW Mediterranean
J Phycol, 56:68-84
-
Schön ME, Eme L, Ettema TJG
(2020)
PhyloMagnet: Fast and accurate screening of short-read meta-omics data using gene-centric phylogenetics
Bioinformatics, 36:1718–1724
-
Sibbald SJ, Eme L, Archibald JM, Roger AJ
(2020)
Lateral gene transfer mechanisms and pan-genomes in eukaryotes
Trends Parasitol. 36:927-941
-
Salomaki ED, Eme L, Brown MW, Kolisko M
(2020)
Releasing uncurated datasets is essential for reproducible phylogenomics.
Nat Ecol Evol. doi:10.1038/s41559-020-01296-w
-
Stairs CW, Sharamshi JE, Tamarit D, Eme L, Jørgensen SL, Spang A, Ettema TJG
(2020)
Chlamydial contribution to anaerobic metabolism during eukaryotic evolution.
Sci Adv. 6:eabb7258.
-
Vosseberg J, van Hooff JJE, Marcet-Houben M, van Vlimmeren A, van Wijk LM, Gabaldón T, Snel B.
(2020)
Timing the origin of eukaryotic cellular complexity with ancient duplications.
Nat Ecol Evol. doi:10.1038/s41559-020-01320-z.
-
Karpov SA, Vishnyakov AE, López-García P, Zorina NA, Ciobanu M, Tcvetkova VS, Moreira D
(2020)
Morphology and molecular phylogeny of Aphelidium insulamus sp. nov. (Aphelida, Opisthosporidia)
Protistology. 14:191–203
-
Irion S, Jardillier L, Sassenhagen I, Christaki U
(2020)
Marked spatio-temporal variations in small phytoplankton structure in contrasted waters of the Southern Ocean (Kerguelen area)
Limnol Oceanogr doi: 10.1002/lno.11555
-
Bouchard F, Agnan F, Bröder L, Fouché L, Hirst C, Sjöberg Y & the SPLASH team
(2020)
The SPLASH Action Group – Towards standardized sampling strategies in permafrost science
Adv Polar Sci, 31: 153-155
2019
-
Muñoz-Gómez SA, Durnin K, Eme L, Paight C, Lane CE, Saffo MB, Slamovits CH
(2019)
Nephromyces represents a diverse and novel lineage of the Apicomplexa that has retained apicoplasts
Genome Biol Evol. 11:2727-2740
-
Belilla J, Moreira D, Jardillier J, Reboul G, Benzerara K, Lopez-Garcia JM, Bertolino P, Lopez-Archilla AI, López-García P
(2019)
Hyperdiverse archaea near life limits at the polyextreme geothermal Dallol area.
Nature Ecol Evol, 3:1552–1561
-
Ponce-Toledo RI, López-García P, Moreira D.
(2019)
Horizontal and endosymbiotic gene transfer in early plastid evolution
New Phytol, 224: 618-624
-
López-García P, Moreira D.
(2019)
Eukaryogenesis, a syntrophy affair
Nat Microbiol. 4:1068-1070.
-
Moreira D, López-García P.
(2019)
Time series are critical to understand microbial plankton diversity and ecology
Mol Ecol, 28:920-922
-
Monteil CL, Vallenet D, Menguy N, Benzerara K, Barbe V, Fouteau S, Cruaud C, Floriani M, Viollier E, Adryanczyk G, Leonhardt N, Faivre D, Pignol D, López-García P, Weld RJ, Lefevre CT
(2019)
A symbiotic origin of magnetoreception in unicellular eukaryotes
Nat Microbiol. 4:1088-1095
-
Lepère C, Domaizon I, Humbert JF, Jardillier L, Hugoni M, Debroas D.
(2019)
Diversity, spatial distribution and activity of fungi in freshwater ecosystems
PeerJ. 7:e6247.
-
Adl SM, Bass D, Lane CE, Lukeš J, Schoch CL, Smirnov A, Agatha S, Berney C, Brown MW, Burki F, Cárdenas P, Čepička I, Chistyakova L, Del Campo J, Dunthorn M, Edvardsen B, Eglit Y, Guillou L, Hampl V, Heiss AA, Hoppenrath M, James TY, Karnkowska A, Karpov S, Kim E, Kolisko M, Kudryavtsev A, Lahr DJG, Lara E, Le Gall L, Lynn DH, Mann DG, Massana R, Mitchell EAD, Morrow C, Park JS, Pawlowski JW, Powell MJ, Richter DJ, Rueckert S, Shadwick L, Shimano S, Spiegel FW, Torruella G, Youssef N, Zlatogursky V, Zhang Q.
(2019)
Revisions to the classification, nomenclature, and diversity of eukaryotes
J Eukaryot Microbiol. 66:4-119.
-
Reboul G, Moreira D, Bertolino P, Hillebrand-Voiculescu A, López-García P
(2019)
Microbial eukaryotes in the suboxic chemosynthetic ecosystem of Movile Cave, Romania
Environ Microbiol Rep, 11:464-473
-
Zeyen N, Benzerara K, Menguy N, Brest J, Templeton A, Webb S, Gérard E, Moreira D, López-García P, Tavera R, Morin G.
(2019)
Fe-bearing phases in modern lacustrine microbialites from Mexico
Geochim. Cosmochim. Acta. 253:201-230.
-
Karpov SA, Moreira D, Mamkaeva MA, Popova OV, Aleoshin VV, López-García P
(2019)
New member of Gromochytriales (Chytridiomycetes) – Apiochytrium granulosporum nov. gen. et sp.
66: 582–591
-
Karpov SA, Vishnyakov AE, Moreira D, López-García P.
(2019)
The ultrastructure of Sanchytrium tribonematis (Sanchytriaceae, Fungi incertae sedis) confirms its close relationship to Amoeboradix.
J Eukaryot Microbiol. 66:892-898
-
Galindo LJ, Torruella G, Moreira D, Eglit Y, Simpson AGB, Völcker E, Clauss S, López-García P
(2019)
Combined cultivation and single-cell approaches to the phylogenomics of nucleariid amoebae, close relatives of Fungi
Philos Trans R Soc Lond B Biol Sci. 374:20190094
-
Iniesto M, Thomazo C, Fara E, Team PB
(2019)
Deciphering the exceptional preservation of the Early Triassic Paris Biota (Bear Lake County, Idaho, USA)
Geobios, 54, 81-93.
2018
-
Torruella G, Grau-Bové X, Moreira D, Karpov SA, Burns J, Sebé-Pedrós A, Völker E, López-García P
(2018)
Global transcriptome analysis of the aphelid Paraphelidium tribonemae supports the phagotrophic origin of fungi
Communications Biology, 1:231
-
Gutiérrez-Preciado A*, Saghaï A*, Moreira D, Zivanovic Y, Deschamps P, López-García P
(2018)
Functional shifts in microbial mats recapitulate early Earth metabolic transitions
Nature Ecol Evol, 2:1700-1708
-
Cam N, Benzerara K, Georgelin T, Jaber M, Lambert JF, Poinsot M, Skouri-Panet F, Moreira D, López-García P, Raimbault E, Cordier L, Jézéquel D
(2018)
Cyanobacterial formation of intracellular Ca-carbonates in undersaturated solutions
Geobiology, 16: 49-61
-
Galindo LJ, Torruella G, Moreira D, Timpano H, Paskerova G, Smirnov A, Nassonova E, López-García P.
(2018)
Evolutionary genomics of Metchnikovella incurvata (Metchnikovellidae): An early branching microsporidium
Genome Biol Evol. 10:2736-2748.
-
Ponce-Toledo RI, Moreira D, López-García P, Deschamps P.
(2018)
Secondary plastids of euglenids and chlorarachniophytes function with a mix of genes of red and green algal ancestry
Mol. Biol. Evol. 35: 2198–2204.
-
Karpov SA, López-García P, Mamkaeva MA, Klimov VI, Vishnyakov AE, Tcvetkova VS, Moreira D.
(2018)
The chytrid-like parasites of algae Amoeboradix gromovi gen. et sp. nov. and Sanchytrium tribonematis belong to a new fungal lineage
Protist. 169:122-140.
-
López-Escardó D, López-García P, Moreira D, Ruiz-Trillo I, Torruella G.
(2018)
Parvularia atlantis gen. et sp. nov., a nucleariid filose amoeba (Holomycota, Opisthokonta)
J Eukaryot Microbiol. 65:170-179.
-
Longo WM, Huang YS, Yao Y, Zhao JJ, Giblin AE, Wang X, Zech R, Haberzettl T, Jardillier L, Toney J, Liu ZH, Krivonogov S, Kolpakova M, Chu GQ, D'Andrea WJ, Harada N, Nagashima K, Sato M, Yonenobu H, Yamada K, Gotanda K, Shinozuka Y.
(2018)
Widespread occurrence of distinct alkenones from Group I haptophytes in freshwater lakes: Implications for paleotemperature and paleoenvironmental reconstructions
Earth Planet. Sci. Lett. 492:239-250 .
-
Rochelle-Newall E, Niboyet A, Jardillier L, Fiorini S, Chollet S, Llavata M, de Santis E, Barot S, Lacroix G.
(2018)
Impacts of elevated atmospheric CO2 concentration on terrestrial-aquatic carbon transfer and a downstream aquatic microbial community
Aquat. Sci. 80:UNSP30.
-
Bass D, Czech L, Williams BAP, Berney C, Dunthorn M, Mahé F, Torruella G, Stentiford GD, Williams TA.
(2018)
Clarifying the relationships between Microsporidia and Cryptomycota
J Eukaryot Microbiol. 65:773-782.
-
Mehrshad M, Rodriguez-Valera F, Amoozegar MA, López-García P, Ghai R.
(2018)
The enigmatic SAR202 cluster up close: shedding light on a globally distributed dark ocean lineage involved in sulfur cycling
ISME J. 12:655-668.
-
Rebollar EA, Gutiérrez-Preciado A, Noecker C, Eng A, Hughey MC, Medina D, Walke JB, Borenstein E, Jensen RV, Belden LK, Harris RN.
(2018)
The skin microbiome of the neotropical frog Craugastor fitzingeri: Inferring potential bacterial-host-pathogen interactions from metagenomic data.
Front Microbiol. 9:466.
-
Iniesto M, Blanco-Moreno C, Villalba A, Buscalioni AD, Guerrero MC, López-Archilla AI
(2018)
Plant tissue decay in long-term experiments with microbial mats
Geosciences, 8: 387.
2017
-
Haro-Moreno J, Rodriguez-Valera F, López-García P, Moreira D, Martin-Cuadrado AB
(2017)
Marine Group II New Insights into Marine Group III Euryarchaeota, from dark to light
ISME J, 11:1102-1117
-
Moreira D, López-García P.
(2017)
Evolution: King-size plastid genomes in a new red algal clade
Curr Biol. 27:R651-R653.
-
Saghaï A, Gutiérrez-Preciado A, Deschamps P, Moreira D, Bertolino P, Ragon M, López-García P.
(2017)
Unveiling microbial interactions in stratified mat communities from a warm saline shallow pond
Environ Microbiol. 19:2405-2421.
-
Moreira D, López-García P.
(2017)
Protist evolution: Stealing genes to gut it out
Curr Biol. 27:R223-R225.
-
López-García P, Eme L, Moreira D.
(2017)
Symbiosis in eukaryotic evolution
J Theor Biol. 434:20-33.
-
Ponce-Toledo RI, Deschamps P, López-García P, Zivanovic Y, Benzerara K, Moreira D.
(2017)
An early-branching freshwater cyanobacterium at the origin of plastids
Curr Biol. 27:386-391.
-
Karpov SA, Torruella G, Moreira D, Mamkaeva MA, López-García P.
(2017)
Molecular phylogeny of Paraphelidium letcheri sp. nov. (Aphelida, Opisthosporidia)
J Eukaryot Microbiol. 64:573-578.
-
Moreira D, Tavera R, Benzerara K, Skouri-Panet F, Couradeau E, Gérard E, Fonta CL, Novelo E, Zivanovic Y, López-García P.
(2017)
Description of Gloeomargarita lithophora gen. nov., sp. nov., a thylakoid-bearing, basal-branching cyanobacterium with intracellular carbonates, and proposal for Gloeomargaritales ord. nov.
Int J Syst Evol Microbiol. 67:653-658
-
Torruella G, Moreira D, López-García P.
(2017)
Phylogenetic and ecological diversity of apusomonads, a lineage of deep-branching eukaryotes
Environ Microbiol Rep. 9:113-119.
-
Karpov SA, Tcvetkova VS, Mamkaeva MA, Torruella G, Timpano H, Moreira D, Mamanazarova KS, López-García P.
(2017)
Morphological and genetic diversity of Opisthosporidia: New aphelid Paraphelidium tribonemae gen. et sp. nov.
J Eukaryot Microbiol. 64:204-212.
-
Debroas D, Domaizon I, Humbert JF, Jardillier L, Lepère C, Oudart A, Taïb N.
(2017)
Overview of freshwater microbial eukaryotes diversity: a first analysis of publicly available metabarcoding data
FEMS Microbiol Ecol. 93:4.
-
Findinier J, Tunçay H, Schulz-Raffelt M, Deschamps P, Spriet C, Lacroix JM, Duchêne T, Szydlowski N, Li-Beisson Y, Peltier G, D'Hulst C, Wattebled F, Dauvillée D.
(2017)
The Chlamydomonas mex1 mutant shows impaired starch mobilization without maltose accumulation
J Exp Bot. 68:5177-5189.
-
Grau-Bové X, Torruella G, Donachie S, Suga H, Leonard G, Richards TA, Ruiz-Trillo I.
(2017)
Dynamics of genomic innovation in the unicellular ancestry of animals
Elife. 6:e26036.
-
Pachiadaki MG, Sintes E, Bergauer K, Brown J, Record N, Swan B, Hallam S, López-García P, Takaki Y, Nunoura T, Woyke T, Herndl GJ, Stepanauskas R.
(2017)
Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation
Science. 358:1046-1051.
2016
-
Derelle R, López-García P, Timpano H, Moreira D.
(2016)
A phylogenomic framework to study the diversity and evolution of Stramenopiles (=Heterokonts)
Mol Biol Evol. 33:2890-2898.
-
Saghaï A, Zivanovic Y, Moreira D, Benzerara K, Bertolino P, Ragon M, Tavera R, López-Archilla AI, López-García P.
(2016)
Comparative metagenomics unveils functions and genome features of microbialite-associated communities along a depth gradient
Environ Microbiol. 18:4990-5004.
-
Simon M, López-García P, Deschamps P, Restoux G, Bertolino P, Moreira D, Jardillier L.
(2016)
Resilience of freshwater communities of small microbial eukaryotes undergoing severe drought events
Front Microbiol. 7:812.
-
Gómez F, Takayama H, Moreira D, López-García P.
(2016)
Unarmoured dinoflagellates with a small hyposome: Torodinium and Lebouridinium gen. nov. for Katodinium glaucum (Gymnodiniales, Dinophyceae)
Eur J Phycol. 51:226-241.
-
Iniesto M, Buscalioni ÁD, Carmen Guerrero M, Benzerara K, Moreira D, López-Archilla AI.
(2016)
Involvement of microbial mats in early fossilization by decay delay and formation of impressions and replicas of vertebrates and invertebrates
Sci Rep. 6:25716.
-
Li J, Margaret-Oliver I, Cam N, Boudier T, Blondeau M, Leroy E, Cosmidis J, Skouri-Panet F, Guigner JM, Ferard C, Poinsot M, Moreira D, López-García P, Cassier-Chauvat C, Chauvat F, Benzerara K.
(2016)
Biomineralization patterns of intracellular carbonatogenesis in cyanobacteria: Molecular hypotheses
Minerals. 10:6.
-
Zeyen N, Daval D, López-García P, Moreira D, Gaillardet J, Benzerara K.
(2016)
Geochemical conditions allowing the formation of modern lacustrine microbialites
Procedia Earth Planet. Sci. 17:380-383.
-
Karpov SA, López-García P, Mamkaeva MA, Vishnyakov AE, Moreira D.
(2016)
Chytridiomycete Polyphagus parasiticus: Molecular phylogeny supports the erection of a new chytridiomycete order
Mycol. Phytopatol. 50:362-366.
-
Karpov SA, Mamkaeva MA, Moreira D, López-García P.
(2016)
Molecular phylogeny of Aphelidium tribonemae reveals its sister relationship with A. aff. melosirae (Aphelida, Opisthosporidia)
Protistology. 10:97–103
-
Pašić L, Martin-Cuadrado AB, López-García P.
(2016)
"Deciphering archaeal communities" Omics tools in the study of archaeal communities
Methods Mol Biol. 1399:1-28.
-
Lukeš J, López-García P, Louis E, Boekhout T.
(2016)
Meeting Report: Minutes from EMBO: Ten years of comparative genomics of eukaryotic microorganisms
Protist.167:217-221.
-
del Campo J, Guillou L, Hehenberger E, Logares R, López-García P, Massana R.
(2016)
Ecological and evolutionary significance of novel protist lineages
Eur J Protistol. 55:4-11.
-
Mizuno C, Ghai R, Saghaï A, López-García P, Rodriguez-Valera F.
(2016)
Genomes of abundant and widespread active viruses from the deep ocean
mBio 7: e00805-16.
2015
-
Gómez F, López-García P, Takayama H, Moreira D.
(2015)
Balechina and the new genus Cucumeridinium gen. nov. (Dinophyceae), unarmored dinoflagellates with thick cell coverings
J Phycol. 51:1088-105.
-
López-García P, Moreira D.
(2015)
Open questions on the origin of eukaryotes
Trends Ecol Evol. 30:697-708.
-
Moreira D, López-García P.
(2015)
Evolution of viruses and cells: do we need a fourth domain of life to explain the origin of eukaryotes?
Philos Trans R Soc Lond B Biol Sci. 370:20140327.
-
Saghaï A, Zivanovic Y, Zeyen N, Moreira D, Benzerara K, Deschamps P, Bertolino P, Ragon M, Tavera R, López-Archilla AI, López-García P.
(2015)
Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites
Front Microbiol. 6:797.
-
López-García P, Zivanovic Y, Deschamps P, Moreira D.
(2015)
Bacterial gene import and mesophilic adaptation in archaea
Nat Rev Microbiol. 13:447-456.
-
Simon M, López-García P, Deschamps P, Moreira D, Restoux G, Bertolino P, Jardillier L.
(2015)
Marked seasonality and high spatial variability of protist communities in shallow freshwater systems
ISME J. 9:1941-1953.
-
Petitjean C, Deschamps P, López-García P, Moreira D, Brochier-Armanet C.
(2015)
Extending the conserved phylogenetic core of archaea disentangles the evolution of the third domain of life
Mol Biol Evol. 32:1242-1254.
-
Martin-Cuadrado AB, Garcia-Heredia I, Moltó AG, López-Úbeda R, Kimes N, López-García P, Moreira D, Rodriguez-Valera F.
(2015)
A new class of marine Euryarchaeota group II from the Mediterranean deep chlorophyll maximum
ISME J. 9:1619-1634.
-
Simon M, Jardillier L, Deschamps P, Moreira D, Restoux G, Bertolino P, López-García P.
(2015)
Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems
Environ Microbiol. 17:3610-3627.
-
Roguet A, Laigle GS, Therial C, Bressy A, Soulignac F, Catherine A, Lacroix G, Jardillier L, Bonhomme C, Lerch TZ, Lucas FS.
(2015)
Neutral community model explains the bacterial community assembly in freshwater lakes
FEMS Microbiol Ecol. 91:11.
-
Grob C, Jardillier L, Hartmann M, Ostrowski M, Zubkov MV, Scanlan DJ.
(2015)
Cell-specific CO2 fixation rates of two distinct groups of plastidic protists in the Atlantic Ocean remain unchanged after nutrient addition
Environ Microbiol Rep. 7:211-218.
-
Szafranski KM, Deschamps P, Cunha MR, Gaudron SM, Duperron S.
(2015)
Colonization of plant substrates at hydrothermal vents and cold seeps in the northeast Atlantic and Mediterranean and occurrence of symbiont-related bacteria
Front Microbiol. 6:162.
-
Zeyen N, Benzerara K, Li J, Groleau A, Balan E, Robert J-L, Esteve I, Tavera R, Moreira D, López-García P.
(2015)
Formation of low-T hydrated silicates in modern microbialites from Mexico and implications for microbial fossilization
Frontiers Earth Sci. 3:64.
-
Faure D, Bonin P, Duran R and the EC2CO consortium.
(2015)
Environmental microbiology as a mosaic of explored ecosystems and issues
Environ Sci Pollut Res. 22:13577–13598.
2014
-
Petitjean C, Deschamps P, López-García P, Moreira D.
(2014)
Rooting the domain archaea by phylogenomic analysis supports the foundation of the new kingdom Proteoarchaeota
Genome Biol Evol. 7:191-204.
-
Ragon M, Benzerara K, Moreira D, Tavera R, López-García P.
(2014)
16S rDNA-based analysis reveals cosmopolitan occurrence but limited diversity of two cyanobacterial lineages with contrasted patterns of intracellular carbonate mineralization
Front Microbiol. 5:331.
-
Benzerara K, Skouri-Panet F, Li J, Férard C, Gugger M, Laurent T, Couradeau E, Ragon M, Cosmidis J, Menguy N, Margaret-Oliver I, Tavera R, López-García P, Moreira D.
(2014)
Intracellular Ca-carbonate biomineralization is widespread in cyanobacteria
Proc Natl Acad Sci U S A. 111:10933-10938.
-
Karpov SA, Mamkaeva MA, Benzerara K, Moreira D, López-García P.
(2014)
Molecular phylogeny and ultrastructure of Aphelidium aff. melosirae (Aphelida, Opisthosporidia)
Protist. 165:512-526.
-
Deschamps P, Zivanovic Y, Moreira D, Rodriguez-Valera F, López-García P.
(2014)
Pangenome evidence for extensive interdomain horizontal transfer affecting lineage core and shell genes in uncultured planktonic thaumarchaeota and euryarchaeota
Genome Biol Evol. 6:1549-1563.
-
Moreira D, López-García P.
(2014)
The rise and fall of Picobiliphytes: how assumed autotrophs turned out to be heterotrophs
Bioessays. 36:468-474.
-
Bachy C, Moreira D, Dolan JR, López-García P.
(2014)
Seasonal dynamics of free-living tintinnid ciliate communities revealed by environmental sequences from the North-West Mediterranean Sea
FEMS Microbiol Ecol. 87:330-342.
-
Moreira D, Deschamps P.
(2014)
What was the real contribution of endosymbionts to the eukaryotic nucleus? Insights from photosynthetic eukaryotes
Cold Spring Harb Perspect Biol. 6:a016014.
-
Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ.
(2014)
The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing
PLoS Biol. 12:e1001889
-
Deschamps P.
(2014)
Primary endosymbiosis: have cyanobacteria and Chlamydiae ever been roommates?
Acta Soc. Bot. Pol. 83:291-302 .
-
Barbieri R, Cavalazzi B, Stivaletta N, López-García P.
(2014)
Silicified biota in high-altitude geothermally-influenced ignimbrites at El Tatio Geyser Field (Andean Cordillera, Chile)
Geomicrobiol J. 31:493–508.
-
Amarouche-Yala S, Benouadah A, El Ouahab Bentabet A, López-García P.
(2014)
Morphological and phylogenetic diversity of thermophilic cyanobacteria in Algerian hot springs
Extremophiles. 18:1035-1047.
2013
-
Gérard E, Ménez B, Couradeau E, Moreira D, Benzerara K, Tavera R, López-García P.
(2013)
Specific carbonate-microbe interactions in the modern microbialites of Lake Alchichica (Mexico)
ISME J. 7:1997-2009.
-
Simon M, López-García P, Moreira D, Jardillier L.
(2013)
New haptophyte lineages and multiple independent colonizations of freshwater ecosystems
Environ Microbiol Rep. 5:322-332.
-
Ragon M, Van Driessche AE, García-Ruíz JM, Moreira D, López-García P.
(2013)
Microbial diversity in the deep-subsurface hydrothermal aquifer feeding the giant gypsum crystal-bearing Naica Mine, Mexico
Front Microbiol. 4:37.
-
Bachy C, Dolan JR, López-García P, Deschamps P, Moreira D.
(2013)
Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study
ISME J. 7:244-255.
-
Kirkham AR, Lepère C, Jardillier LE, Not F, Bouman H, Mead A, Scanlan DJ.
(2013)
A global perspective on marine photosynthetic picoeukaryote community structure
ISME J. 7:922-936.
-
Collén J, Porcel B, Carré W, Ball SG, Chaparro C, Tonon T, Barbeyron T, Michel G, Noel B, Valentin K, Elias M, Artiguenave F, Arun A, Aury JM, Barbosa-Neto JF, Bothwell JH, Bouget FY, Brillet L, Cabello-Hurtado F, Capella-Gutiérrez S, Charrier B, Cladière L, Cock JM, Coelho SM, Colleoni C, Czjzek M, Da Silva C, Delage L, Denoeud F, Deschamps P, Dittami SM, Gabaldón T, Gachon CM, Groisillier A, Hervé C, Jabbari K, Katinka M, Kloareg B, Kowalczyk N, Labadie K, Leblanc C, Lopez PJ, McLachlan DH, Meslet-Cladiere L, Moustafa A, Nehr Z, Nyvall Collén P, Panaud O, Partensky F, Poulain J, Rensing SA, Rousvoal S, Samson G, Symeonidi A, Weissenbach J, Zambounis A, Wincker P, Boyen C.
(2013)
Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida
Proc Natl Acad Sci U S A. 110:5247-5252.
-
Couradeau E, Benzerara K, Gérard E, Estève I, Moreira D, Tavera R, López-García P.
(2013)
In situ microscale cyanobacterial calcification in modern microbialites
Biogeosciences 10: 5255-5266
-
López-Pérez M, Gonzaga A, Martin-Cuadrado AB, López-García P, Rodriguez-Valera F, Kimes NE.
(2013)
Intra- and intergenomic variation of ribosomal RNA operons in concurrent Alteromonas macleodii strains
Microb Ecol. 65:720-730.
-
Chevalier N, Bouloubassi I, Birgel D, Taphanel MH, López-García P.
(2013)
Microbial methane turnover at Marmara Sea cold seeps: a combined 16S rRNA and lipid biomarker investigation
Geobiology. 11:55-71.
2012
-
Lombard J, López-García P, Moreira D.
(2012)
Phylogenomic investigation of phospholipid synthesis in archaea
Archaea. 2012:630910.
-
Gonzaga A, Martin-Cuadrado AB, López-Pérez M, Megumi Mizuno C, García-Heredia I, Kimes NE, Lopez-García P, Moreira D, Ussery D, Zaballos M, Ghai R, Rodriguez-Valera F.
(2012)
Polyclonality of concurrent natural populations of Alteromonas macleodii
Genome Biol Evol. 4:1360-1374.
-
Petitjean C, Moreira D, López-García P, Brochier-Armanet C.
(2012)
Horizontal gene transfer of a chloroplast DnaJ-Fer protein to Thaumarchaeota and the evolutionary history of the DnaK chaperone system in Archaea
BMC Evol Biol. 12:226.
-
Lombard J, López-García P, Moreira D.
(2012)
An ACP-independent fatty acid synthesis pathway in archaea: implications for the origin of phospholipids
Mol Biol Evol. 29:3261-3265.
-
Ragon M, Fontaine MC, Moreira D, López-García P.
(2012)
Different biogeographic patterns of prokaryotes and microbial eukaryotes in epilithic biofilms
Mol Ecol. 21:3852-3868.
-
Lombard J, López-García P, Moreira D.
(2012)
The early evolution of lipid membranes and the three domains of life
Nat Rev Microbiol. 10:507-515.
-
Couradeau E, Benzerara K, Gérard E, Moreira D, Bernard S, Brown GE Jr, López-García P.
(2012)
An early-branching microbialite cyanobacterium forms intracellular carbonates
Science. 336:459-462.
-
Bachy C, Gómez F, López-García P, Dolan JR, Moreira D.
(2012)
Molecular phylogeny of tintinnid ciliates (Tintinnida, Ciliophora)
Protist. 163:873-887.
-
Gómez F, Moreira D, López-García P.
(2012)
Sinophysis and Pseudophalacroma are distantly related to typical Dinophysoid dinoflagellates (Dinophysales, Dinophyceae)
J Eukaryot Microbiol. 59:188-190.
-
Deschamps P, Moreira D.
(2012)
Reevaluating the green contribution to diatom genomes
Genome Biol Evol. 4:683-688.
-
López-García P.
(2012)
The place of viruses in biology in light of the metabolism-versus-replication-first debate
Hist. Phil. Life Sci. 34:391-406.
-
López-García P, Moreira D.
(2012)
Viruses in biology
Evo Edu Outreach. 5:389–398.
-
Gómez F, Moreira D, Dolan J, López-García P.
(2012)
Molecular phylogeny of the marine dinoflagellate genus Heterodinium (Dinophyceae)
Eur J Phycol. 47:95–104.
-
Roche SM, Grépinet O, Kerouanton A, Ragon M, Leclercq A, Témoin S, Schaeffer B, Skorski G, Mereghetti L, Le Monnier A, Velge P.
(2012)
Polyphasic characterization and genetic relatedness of low-virulence and virulent Listeria monocytogenes isolates
BMC Microbiol. 12:304.
2011
-
Couradeau E, Benzerara K, Moreira D, Gérard E, Kaźmierczak J, Tavera R, López-García P.
(2011)
Prokaryotic and eukaryotic community structure in field and cultured microbialites from the alkaline Lake Alchichica (Mexico)
PLoS One. 6:e28767.
-
Bachy C, López-García P, Vereshchaka A, Moreira D.
(2011)
Diversity and vertical distribution of microbial eukaryotes in the snow, sea ice and seawater near the north pole at the end of the polar night
Front Microbiol. 2:106.
-
Ragon M, Restoux G, Moreira D, Møller AP, López-García P.
(2011)
Sunlight-exposed biofilm microbial communities are naturally resistant to Chernobyl ionizing-radiation levels
PLoS One. 6:e21764.
-
Gómez F, López-García P, Moreira D.
(2011)
Molecular phylogeny of dinophysoid dinoflagellates: the systematic position of Oxyphysis oxytoxoides and the Dinophysis hastata group (Dinophysales, Dinophyceae)
J Phycol. 47:393-406.
-
Brochier-Armanet C, Deschamps P, López-García P, Zivanovic Y, Rodríguez-Valera F, Moreira D.
(2011)
Complete-fosmid and fosmid-end sequences reveal frequent horizontal gene transfers in marine uncultured planktonic archaea
ISME J. 5:1291-1302.
-
Deschamps P, Lara E, Marande W, López-García P, Ekelund F, Moreira D.
(2011)
Phylogenomic analysis of kinetoplastids supports that trypanosomatids arose from within bodonids
Mol Biol Evol. 28:53-58
-
Gómez F, Moreira D, Benzerara K, López-García P.
(2011)
Solenicola setigera is the first characterized member of the abundant and cosmopolitan uncultured marine stramenopile group MAST-3
Environ Microbiol. 13:193-202.
-
Lara E, Mitchell EA, Moreira D, López García P.
(2011)
Highly diverse and seasonally dynamic protist community in a pristine peat bog
Protist. 162:14-32.
-
Quaiser A, Zivanovic Y, Moreira D, López-García P.
(2011)
Comparative metagenomics of bathypelagic plankton and bottom sediment from the Sea of Marmara
ISME J. 5:285-304.
-
Kirkham AR, Jardillier LE, Tiganescu A, Pearman J, Zubkov MV, Scanlan DJ.
(2011)
Basin-scale distribution patterns of photosynthetic picoeukaryotes along an Atlantic Meridional Transect
Environ Microbiol. 13:975-990.
-
Gómez F, Moreira D, López-García P.
(2011)
Avances en el estudio de los dinoflagelados (Dinophyceae) con la filogenia molecular
Hidrobiológica, 21:263-284.
-
Kirkham AR, Jardillier L, Holland R, Zubkov MV, Scanlan DJ.
(2011)
Analysis of photosynthetic picoeukaryote community structure along an extended Ellett Line transect in the northern North Atlantic reveals a dominance of novel prymnesiophyte and prasinophyte phylotypes
Deep Sea Res. Part I. 58:733-744.
-
Lombard J, Moreira D.
(2011)
Origins and early evolution of the mevalonate pathway of isoprenoid biosynthesis in the three domains of life
Mol Biol Evol. 28:87-99.
-
Lombard J, Moreira D.
(2011)
Early evolution of the biotin-dependent carboxylase family
BMC Evol Biol. 11:232.
-
Stivaletta N, Barbieri R, Cevenini F, López-García P.
(2011)
Physico-chemical conditions and microbial diversity associated to evaporite deposits in the Laguna de la Piedra (Salar de Atacama, Chile)
Geomicrobiol J. 28:83-95.
-
Kaźmierczak J, Kempe S, Kremer B, López-García P, Moreira D, Tavera R.
(2011)
Hydrochemistry and microbialites of the alkaline crater Lake Alchichica, Mexico
Facies. 57:543-570.
-
Gómez F, López-García P, Moreira D.
(2011)
Molecular phylogeny of the sand-dwelling dinoflagellates Amphidiniopsis hirsuta and A. swedmarkii (Peridiniales, Dinophyceae)
Acta Protozool. 50:255-262.
-
Eme L, Trilles A, Moreira D, Brochier-Armanet C.
(2011)
The phylogenomic analysis of the anaphase promoting complex and its targets points to complex and modern-like control of the cell cycle in the last common ancestor of eukaryotes
BMC Evol Biol. 11:265.
2010
-
Ghai R, Martin-Cuadrado AB, Molto AG, Heredia IG, Cabrera R, Martin J, Verdú M, Deschamps P, Moreira D, López-García P, Mira A, Rodriguez-Valera F.
(2010)
Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing
ISME J. 4:1154-1166
-
Gómez F, Moreira D, López-García P.
(2010)
Molecular phylogeny of noctilucoid dinoflagellates (Noctilucales, Dinophyceae)
Protist. 161:466-478.
-
Lara E, Moreira D, López-García P.
(2010)
The environmental clade LKM11 and Rozella form the deepest branching clade of fungi
Protist. 161:116-121.
-
Gómez F, Moreira D, López-García P.
(2010)
Neoceratium gen. nov., a new genus for all marine species currently assigned to Ceratium (Dinophyceae)
Protist. 161:35-54.
-
Jardillier L, Zubkov MV, Pearman J, Scanlan DJ.
(2010)
Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean
ISME J. 4:1180-1192.
-
Colleoni C, Linka M, Deschamps P, Handford MG, Dupree P, Weber AP, Ball SG.
(2010)
Phylogenetic and biochemical evidence supports the recruitment of an ADP-glucose translocator for the export of photosynthate during plastid endosymbiosis
Mol Biol Evol. 27:2691-701.
-
Gómez F, Moreira D, López-García P.
(2010)
Molecular phylogeny of the dinoflagellates Podolampas and Blepharocysta (Peridiniales, Dinophyceae)
Phycologia. 49:212-220.
-
Stivaletta N, López-García P, Boihem L, Mille D, Barbieri R.
(2010)
Biomarkers of endolithic communities within gypsum crusts (Southern Tunisia)
Geomicrobiol J. 27:101-110.
2009
-
Gómez F, López-García P, Moreira D.
(2009)
Molecular phylogeny of the ocelloid-bearing dinoflagellates Erythropsidinium and Warnowia (warnowiaceae, dinophyceae)
J Eukaryot Microbiol. 56:440-445.
-
Marande W, López-García P, Moreira D.
(2009)
Eukaryotic diversity and phylogeny using small- and large-subunit ribosomal RNA genes from environmental samples
Environ Microbiol. 11:3179-3188.
-
Gómez F, López-García P, Nowaczyk A, Moreira D.
(2009)
The crustacean parasites Ellobiopsis Caullery, 1910 and Thalassomyces Niezabitowski, 1913 form a monophyletic divergent clade within the Alveolata
Syst Parasitol. 74:65-74.
-
Gómez F, Moreira D, López-García P.
(2009)
Life cycle and molecular phylogeny of the dinoflagellates Chytriodinium and Dissodinium, ectoparasites of copepod eggs
Eur J Protistol. 45:260-270.
-
Gérard E, Moreira D, Philippot P, Van Kranendonk MJ, López-García P.
(2009)
Modern subsurface bacteria in pristine 2.7 Ga-old fossil stromatolite drillcore samples from the Fortescue Group, Western Australia
PLoS One. 4:e5298.
-
Moreira D, López-García P.
(2009)
Ten reasons to exclude viruses from the tree of life
Nat Rev Microbiol. 7:306-311.
-
Lara E, Moreira D, Vereshchaka A, López-García P.
(2009)
Pan-oceanic distribution of new highly diverse clades of deep-sea diplonemids
Environ Microbiol. 11:47-55.
-
Deschamps P, Moreira D.
(2009)
Signal conflicts in the phylogeny of the primary photosynthetic eukaryotes
Mol Biol Evol. 26:2745-2753.
-
Shi XL, Marie D, Jardillier L, Scanlan DJ, Vaulot D.
(2009)
Groups without cultured representatives dominate eukaryotic picophytoplankton in the oligotrophic South East Pacific Ocean
PLoS One. 4:e7657.
-
López-García P, Moreira D.
(2009)
Yet viruses cannot be included in the tree of life
Nature Rev. Microbiol. 7:615–617
-
Eme L, Moreira D, Talla E, Brochier-Armanet C.
(2009)
A complex cell division machinery was present in the last common ancestor of eukaryotes
PLoS One. 4:e5021.
2008
-
Quaiser A, López-García P, Zivanovic Y, Henn MR, Rodriguez-Valera F, Moreira D.
(2008)
Comparative analysis of genome fragments of Acidobacteria from deep Mediterranean plankton
Environ Microbiol. 10:2704-2717.
-
Martin-Cuadrado AB, Rodriguez-Valera F, Moreira D, Alba JC, Ivars-Martínez E, Henn MR, Talla E, López-García P.
(2008)
Hindsight in the relative abundance, metabolic potential and genome dynamics of uncultivated marine archaea from comparative metagenomic analyses of bathypelagic plankton of different oceanic regions
ISME J. 2:865-886.
-
López-García P, Moreira D.
(2008)
Tracking microbial biodiversity through molecular and genomic ecology
Res Microbiol. 159:67-73.
-
Deschamps P, Colleoni C, Nakamura Y, Suzuki E, Putaux JL, Buléon A, Haebel S, Ritte G, Steup M, Falcón LI, Moreira D, Löffelhardt W, Raj JN, Plancke C, d'Hulst C, Dauvillée D, Ball S.
(2008)
Metabolic symbiosis and the birth of the plant kingdom
Mol Biol Evol. 25:536-548.
-
Riaz K, Elmerich C, Moreira D, Raffoux A, Dessaux Y, Faure D.
(2008)
A metagenomic analysis of soil bacteria extends the diversity of quorum-quenching lactonases
Environ Microbiol. 10:560-570
-
Moreira D, Brochier-Armanet C.
(2008)
Giant viruses, giant chimeras: the multiple evolutionary histories of Mimivirus genes
BMC Evol Biol. 8:12.
-
Epstein S, López-García P.
(2008)
Missing protists: a molecular prospective
Biodiv Conserv. 17:261-276.
2007
-
Martín-Cuadrado AB, López-García P, Alba JC, Moreira D, Monticelli L, Strittmatter A, Gottschalk G, Rodríguez-Valera F.
(2007)
Metagenomics of the deep Mediterranean, a warm bathypelagic habitat
PLoS One. 2:e914.
-
Briée C, Moreira D, López-García P.
(2007)
Archaeal and bacterial community composition of sediment and plankton from a suboxic freshwater pond
Res Microbiol. 158:213-227.
-
López-García P, Vereshchaka A, Moreira D.
(2007)
Eukaryotic diversity associated with carbonates and fluid-seawater interface in Lost City hydrothermal field
Environ Microbiol. 9:546-554.
-
Moreira D, von der Heyden S, Bass D, López-García P, Chao E, Cavalier-Smith T.
(2007)
Global eukaryote phylogeny: Combined small- and large-subunit ribosomal DNA trees support monophyly of Rhizaria, Retaria and Excavata
Mol Phylogenet Evol. 44:255-266.
-
López-Archilla AI, Moreira D, Velasco S, López-García P.
(2007)
Archaeal and bacterial community composition of a pristine coastal aquifer in Doñana National Park, Spain
Aquatic Microbial Ecol. 47:123-139.
2006
-
Moussard H, Moreira D, Cambon-Bonavita MA, López-García P, Jeanthon C.
(2006)
Uncultured Archaea in a hydrothermal microbial assemblage: phylogenetic diversity and characterization of a genome fragment from a euryarchaeote
FEMS Microbiol Ecol. 57:452-469.
-
López-García P, Moreira D.
(2006)
Selective forces for the origin of the eukaryotic nucleus
Bioessays. 28:525-533.
-
Moussard H, Henneke G, Moreira D, Jouffe V, López-García P, Jeanthon C.
(2006)
Thermophilic lifestyle for an uncultured archaeon from hydrothermal vents: evidence from environmental genomics
Appl Environ Microbiol. 72:2268-2271.
-
Moreira D, Rodríguez-Valera F, López-García P.
(2006)
Metagenomic analysis of mesopelagic Antarctic plankton reveals a novel deltaproteobacterial group
Microbiology. 152:505-517.
-
Slapeta J, López-García P, Moreira D.
(2006)
Present status of the molecular ecology of kathablepharids
Protist. 157:7-11.
-
Slapeta J, López-García P, Moreira D.
(2006)
Global dispersal and ancient cryptic species in the smallest marine eukaryotes
Mol Biol Evol. 23:23-29.
-
Benzerara K, Menguy N, López-García P, Yoon TH, Kazmierczak J, Tyliszczak T, Guyot F, Brown GE Jr.
(2006)
Nanoscale detection of organic signatures in carbonate microbialites
Proc Natl Acad Sci U S A. 103:9440-9445.
-
Benzerara K, Chapon V, Moreira D, López-García P, Heulin T, Guyot F.
(2006)
Microbial diversity on the Tatahouine meteorite
Meteorit. Planet. Sci. 41:1249-1265.
-
Pascal R, Boiteau L, Forterre P, Gargaud M, Lazcano A, López-García P, Moreira D, Maurel MC, Pereto J, Prieur D, Reisse J.
(2006)
Prebiotic chemistry - Biochemistry - Emergence of life (4.4-2 Ga)
Earth Moon Planets. 98:153-203.
-
López-García P; Moreira D; Douzery E; Forterre P; Van Zuilen M; Claeys P; Prieur D.
(2006)
Ancient fossil record and early evolution (ca. 3.8 to 0.5 Ga)
Earth Moon Planets. 98:247-290.
-
Montmerle T, Claeys P, Gargaud M, López-García P, Martin H, Pascal R, Reisse J, Selsis F.
(2006)
Life on earth ... and elsewhere?
Earth Moon Planets. 98:299-312.
2005
-
Slapeta J, Moreira D, López-García P.
(2005)
The extent of protist diversity: insights from molecular ecology of freshwater eukaryotes
Proc Biol Sci. 272:2073-2081.
-
Bass D, Moreira D, López-García P, Polet S, Chao EE, von der Heyden S, Pawlowski J, Cavalier-Smith T.
(2005)
Polyubiquitin insertions and the phylogeny of Cercozoa and Rhizaria
Protist. 156:149-161.
-
Peretó J, López-García P, Moreira D.
(2005)
Phylogenetic analysis of eukaryotic thiolases suggests multiple proteobacterial origins
J Mol Evol. 61:65-74.
-
López-García P, Kazmierczak J, Benzerara K, Kempe S, Guyot F, Moreira D.
(2005)
Bacterial diversity and carbonate precipitation in the giant microbialites from the highly alkaline Lake Van, Turkey
Extremophiles. 9:263-274.
-
Moreira D, López-García P.
(2005)
Comment on "The 1.2-megabase genome sequence of Mimivirus"
Science. 308:1114.
-
Nercessian O, Bienvenu N, Moreira D, Prieur D, Jeanthon C.
(2005)
Diversity of functional genes of methanogens, methanotrophs and sulfate reducers in deep-sea hydrothermal environments.
Environ. Microbiol 7:118-132.
-
Gérard E, Guyot F, Philippot P, López-García P.
(2005)
Fluorescence in situ hybridisation coupled to ultra small immunogold detection to identify prokaryotic cells using transmission and scanning electron microscopy
J Microbiol Methods. 63:20-28.
-
Vickerman K, Appleton PL, Clarke KJ, Moreira D.
(2005)
Aurigamonas solis n. gen., n. sp., a soil-dwelling predator with unusual helioflagellate organisation and belonging to a novel clade within the Cercozoa
Protist. 156:335-354.
2004
-
Moreira D, López-García P, Vickerman K.
(2004)
An updated view of kinetoplastid phylogeny using environmental sequences and a closer outgroup: proposal for a new classification of the class Kinetoplastea
Int J Syst Evol Microbiol. 54:1861-1875.
-
Moreira D, Ranjard L, López-Garcia P.
(2004)
The nucleolar proteome and the (endosymbiotic) origin of the nucleus
Bioessays. 26:1144-1145.
-
Peretó J, López-García P, Moreira D.
(2004)
Ancestral lipid biosynthesis and early membrane evolution
Trends Biochem Sci. 29:469-477.
-
Moreira D, Rodríguez-Valera F, López-García P.
(2004)
Analysis of a genome fragment of a deep-sea uncultivated Group II euryarchaeote containing 16S rDNA, a spectinomycin-like operon and several energy metabolism genes
Environ Microbiol. 6:959-969.
-
López-Archilla AI, Gérard E, Moreira D, López-García P.
(2004)
Macrofilamentous microbial communities in the metal-rich and acidic River Tinto, Spain
FEMS Microbiol Lett. 235:221-228.
-
Brochier C, López-García P, Moreira D.
(2004)
Horizontal gene transfer and archaeal origin of deoxyhypusine synthase homologous genes in bacteria
Gene. 330:169-176.
-
López-Archilla AI, Moreira D, López-García P, Guerrero C.
(2004)
Phytoplankton diversity and cyanobacterial dominance in a hypereutrophic shallow lake with biologically produced alkaline pH
Extremophiles. 8:109-115.
-
López-García P, Brochier C, Moreira D, Rodríguez-Valera F.
(2004)
Comparative analysis of a genome fragment of an uncultivated mesopelagic crenarchaeote reveals multiple horizontal gene transfers
Environ Microbiol. 6:19-34.
-
Glamoclija M, Garrel L, Berthon J, López-García P.
(2004)
Biosignatures and bacterial diversity in hydrothermal deposits of Solfatara Crater, Italy
Geomicrobiol J. 21:529-541.
-
Danelian T, Moreira D.
(2004)
Palaeontological and molecular evidence for the origin of silica secreting marine organisms
CR Palevol. 3:229-236.
-
Mira A, Pushker R, Legault BA, Moreira D, Rodríguez-Valera F.
(2004)
Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics
BMC Evol Biol. 4:50.
2003
-
Moreira D, López-García P.
(2003)
Are hydrothermal vents oases for parasitic protists?
Trends Parasitol. 19:556-558.
-
López-García P, Duperron S, Philippot P, Foriel J, Susini J, Moreira D.
(2003)
Bacterial diversity in hydrothermal sediment and epsilonproteobacterial dominance in experimental microcolonizers at the Mid-Atlantic Ridge
Environ Microbiol. 5:961-976.
-
López-García P, Philippe H, Gail F, Moreira D.
(2003)
Autochthonous eukaryotic diversity in hydrothermal sediment and experimental microcolonizers at the Mid-Atlantic Ridge
Proc Natl Acad Sci U S A. 100:697-702.
-
Bapteste E, Moreira D, Philippe H.
(2003)
Rampant horizontal gene transfer and phospho-donor change in the evolution of the phosphofructokinase
Gene. 318:185-191.
2002
-
López-García P, Gaill F, Moreira D.
(2002)
Wide bacterial diversity associated with tubes of the vent worm Riftia pachyptila
Environ Microbiol. 4:204-215.
-
Moreira D, López-García P.
(2002)
The molecular ecology of microbial eukaryotes unveils a hidden world
Trends Microbiol. 10:31-38.
-
López-García P, Rodríguez-Valera F, Moreira D.
(2002)
Toward the monophyly of Haeckel's radiolaria: 18S rRNA environmental data support the sisterhood of polycystinea and acantharea
Mol Biol Evol. 19:118-121.
-
Brochier C, Bapteste E, Moreira D, Philippe H.
(2002)
Eubacterial phylogeny based on translational apparatus proteins
Trends Genet. 18:1-5.
-
Moreira D, Kervestin S, Jean-Jean O, Philippe H.
(2002)
Evolution of eukaryotic translation elongation and termination factors: variations of evolutionary rate and genetic code deviations
Mol Biol Evol. 19:189-200.
2001
-
López-García P, Rodríguez-Valera F, Pedrós-Alió C, Moreira D.
(2001)
Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton
Nature. 409:603-607.
-
Moreira D, López-García P, Rodríguez-Valera F.
(2001)
New insights into the phylogenetic position of diplonemids: G+C content bias, differences of evolutionary rate and a new environmental sequence
Int J Syst Evol Microbiol. 51:2211-2219.
-
López-García P, López-López A, Moreira D, Rodríguez-Valera F.
(2001)
Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front
FEMS Microbiol Ecol. 36:193-202.
-
López-García P, Moreira D, López-López A, Rodríguez-Valera F.
(2001)
A novel haloarchaeal-related lineage is widely distributed in deep oceanic regions
Environ Microbiol. 3:72-78.
-
Moreira D, Philippe H.
(2001)
Sure facts and open questions about the origin and evolution of photosynthetic plastids
Res Microbiol. 152:771-780.
2000
-
Moreira D, Le Guyader H, Philippe H.
(2000)
The origin of red algae and the evolution of chloroplasts
Nature. 405:69-72.
-
Philippe H, Lopez P, Brinkmann H, Budin K, Germot A, Laurent J, Moreira D, Müller M, Le Guyader H.
(2000)
Early-branching or fast-evolving eukaryotes? An answer based on slowly evolving positions
Proc Biol Sci. 267:1213-1221.
-
Philippe H, Germot A, Moreira D.
(2000)
The new phylogeny of eukaryotes
Curr Opin Genet Dev. 10:596-601.
-
Brochier C, Philippe H, Moreira D.
(2000)
The evolutionary history of ribosomal protein RpS14: horizontal gene transfer at the heart of the ribosome
Trends Genet. 16:529-533.
-
Moreira D, Philippe H.
(2000)
Molecular phylogeny: pitfalls and progress
Int Microbiol. 3:9-16.
-
Myllykallio H, Lopez P, López-García P, Heilig R, Saurin W, Zivanovic Y, Philippe H, Forterre P.
(2000)
Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon
Science. 288:2212-2215.
-
López-García P, Forterre P.
(2000)
DNA topology and the thermal stress response, a tale from mesophiles and hyperthermophiles
Bioessays. 22:738-746.
1999
1998